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Showing :
blocked design
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3
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EdgeR - blocking for multiple factors at once - Errors
EdgeR
multiple factor design
blocked design
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
D
▴ 10
1
vote
5
replies
1.4k
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Error message with Voom with blocked design matrix
voom
blocked design
limma
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
raf4
▴ 30
2 results • Page
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Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…
Comment: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
georgii.vdovin
• 0
Thank you!
Comment: Feature Counts - potential bug with outfile.jcounts
by
Gordon Smyth
52k
I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
• 0
Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…
Comment: Cannot install GO.db and org.Hs.eg.db
by
Gabriel
• 0
The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …
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Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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